The Gabon international ‘had muscular problems’ on Wednesday and the duration of the injury is yet to be ascertained.
The 28-year-old has registered 15 goals this season in his 14 appearances for Peter Bosz’s side.
The club confirmed that the forward will not play a part in the outing via its social media on Wednesday.
“Without Aubameyang to Magdeburg: this afternoon (Wednesday), the Borussia Dortmund striker had muscular problems,” the club tweeted.
